- Class: 1
- Architecture: 1.10:Orthogonal Bundle
- Topology: 1.10.375:Human Immunodeficiency Virus Type 1 Capsid Protein
- Homology: 1.10.375.10:Human Immunodeficiency Virus Type 1 Capsid Protein
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1afv | [A2B2C2] | [A4B2] | [A4B2] | 3.7 | PB:LEAD (II) ION | |||
1ak4 | [AB] | [AB] | [AB] | 2.36 | ||||
1d1d | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1e6j | [ABC] | [A2B] | [A2B] | 3 | ||||
1eia | [A4] | [A4] | [A4] | 2.7 | ||||
1em9 | [A] | [A] | [A] | 2.05 | MG:MAGNESIUM ION | |||
1g03 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1gwp | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1l6n | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1m9c | [AB] | [AB] | [AB] | 2 | ||||
1m9d | [AB] | [AB] | [AB] | 1.9 | ||||
1m9e | [AB] | [AB] | [AB] | 1.72 | ||||
1m9f | [AB] | [AB] | [AB] | 1.73 | ||||
1m9x | [AB] | [AB] | [AB] | 1.7 | ||||
1m9y | [AB] | [AB] | [AB] | 1.9 | ||||
1p7n | [A2] | [A2] | [A2] | 2.6 | ||||
1qrj | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1u7k | [A6] | [A6] | [A6] | 1.85 | MSE:SELENOMETHIONINE | |||
2eia | [A4] | [A4] | [A4] | 2.7 | ||||
2gol | [AB] | [AB] | [AB] | 2.2 | SO4:SULFATE ION | |||
2gon | [A] | [A] | [A] | 1.9 | FLC:CITRATE ANION MSE:SELENOMETHIONINE | |||
2jpr | [A] | [A] | [A] | NOTAPPLICABLE. | JPR:1-(3-CHLORO-4-METHYLPHENYL)-3-{2-[({5-[(DIMETHYLAMINO)METHYL]-2-FURYL}METHYL)THIO]ETHYL}UREA | |||
2kgf | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2lf4 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2m8l | [A2] | [A2] | [A2] | NOTAPPLICABLE. | ||||
2m8n | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2m8p | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2pwm | [A2] | [A2] | [A2] | 1.9 | CL:CHLORIDE ION | |||
2pwo | [A2] | [A2] | [A2] | 1.45 | CL:CHLORIDE ION | |||
2pxr | [A] | [A] | [A] | 1.5 | CL:CHLORIDE ION ZN:ZINC ION | |||
2v4x | [A] | [A] | [A] | 1.5 | MSE:SELENOMETHIONINE | |||
2wlv | [AB] | [A2] | [A2] | 1.25 | ||||
2x2d | [AB] | [AB] | [AB] | 1.95 | ALY:N(6)-ACETYLLYSINE | |||
2x82 | [A2] | [A2] | [A2] | 2.6 | ||||
2x83 | [AB] | [AB] | [AB] | 1.7 | ||||
2xde | [A] | [A] | [A] | 1.4 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE | |||
2xgu | [A2] | [A2] | [A2] | 1.5 | ACT:ACETATE ION | |||
2xgv | [A] | [A] | [A] | 2 | ||||
2xgy | [AB] | [AB] | [AB] | 1.8 | GOL:GLYCEROL | |||
2y4z | [A] | [A] | [A] | 2 | GOL:GLYCEROL | |||
3bp9 | [A6] | [A6] | [A6] | 2.6 | GOL:GLYCEROL IPA:ISOPROPYL ALCOHOL | |||
3h47 | [A6] | [A6] | [A6] | 1.9 | ||||
3h4e | [A6] | [A6] | [A6] | 2.7 | ||||
3mge | [A6] | [A6] | [A6] | 1.9 | EDO:1,2-ETHANEDIOL | |||
3nte | [A2] | [A2] | [A2] | 1.95 | FE:FE (III) ION I3M:TRI-IODODE ANION IOD:IODIDE ION NA:SODIUM ION | |||
3p05 | [A5] | [A5] | [A5] | 2.5 | IOD:IODIDE ION | |||
4b4n | [A][a] | [A][a] | [A][a] | 1.81 | ||||
4dga | [AB] | [AB] | [AB] | 1.9 | ||||
4dge | [AB] | [AB] | [AB] | 2.2 | ||||
4e91 | [A] | [A] | [A] | 1.7 | 0OE:4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID 0OF:(3S)-1-ETHYL-3-[3-HYDROXY-5-(PYRIDIN-3-YL)PHENYL]-5-PHENYL-7-(TRIFLUOROMETHYL)-1H-1,5-BENZODIAZEPINE-2,4(3H,5H)-DIONE IOD:IODIDE ION | |||
4e92 | [A] | [A] | [A] | 1.8 | 0OE:4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID 0OG:3-{5-[3-ETHYL-5-(5-METHYLFURAN-2-YL)-1H-PYRAZOL-1-YL]-1-[(6-OXO-1,6-DIHYDROPYRIDIN-3-YL)METHYL]-1H-BENZIMIDAZOL-2-YL}-4-HYDROXYBENZOIC ACID | |||
4htw | [A] | [A] | [A] | 2.9 | ||||
4inb | [A2] | [A2] | [A2] | 1.8 | 1F6:(3Z)-3-{[(2-METHOXYETHYL)AMINO]METHYLIDENE}-1-METHYL-5-PHENYL-7-(TRIFLUOROMETHYL)-1H-1,5-BENZODIAZEPINE-2,4(3H,5H)-DIONE NA:SODIUM ION | |||
4j93 | [A] | [A] | [A] | 1.74 | 0OE:4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID 1JR:(4S)-3-PHENYL-4-(PYRIDIN-3-YL)-4,5-DIHYDROPYRROLO[3,4-C]PYRAZOL-6(2H)-ONE | |||
4lqw | [AB] | [AB] | [AB] | 1.95 | ||||
4nx4 | [A] | [A] | [A] | 1.5 | CL:CHLORIDE ION JPR:1-(3-CHLORO-4-METHYLPHENYL)-3-{2-[({5-[(DIMETHYLAMINO)METHYL]-2-FURYL}METHYL)THIO]ETHYL}UREA ZN:ZINC ION | |||
4ph0 | [A6] | [A6] | [A6] | 2.75 | ||||
4ph2 | [A] | [A] | [A] | 1.44 | GOL:GLYCEROL SO4:SULFATE ION | |||
4ph3 | [A] | [A] | [A] | 2.44 | CSO:S-HYDROXYCYSTEINE GOL:GLYCEROL IOD:IODIDE ION | |||
4qnb | [A6] | [A6] | [A6] | 2 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE | |||
4u0a | [A6][a6] | [A6][a6] | [A6][a6] | 2.05 | CL:CHLORIDE ION | |||
4u0b | [A6][a6] | [A6][a6] | [A6][a6] | 2.8 | ||||
4u0c | [A6][a6] | [A6][a6] | [A6][a6] | 1.77 | ||||
4u0d | [A6][a3] | [A6][a3] | [A6][a3] | 3 | CL:CHLORIDE ION | |||
4u0e | [A6] | [A6] | [A6] | 2.04 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION | |||
4u0f | [A6] | [A6] | [A6] | 2.22 | 3A8:(4S)-4-(4-HYDROXYPHENYL)-3-PHENYL-4,5-DIHYDROPYRROLO[3,4-C]PYRAZOL-6(1H)-ONE EDO:1,2-ETHANEDIOL | |||
4wym | [A6][a6] | [A6][a6] | [A6][a6] | 2.6 | ||||
4xfx | [A6] | [A6] | [A6] | 2.43 | CL:CHLORIDE ION IOD:IODIDE ION | |||
4xfy | [A6] | [A6] | [A6] | 2.8 | 1PE:PENTAETHYLENE GLYCOL CL:CHLORIDE ION | |||
4xfz | [A6] | [A6] | [A6] | 2.7 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION IOD:IODIDE ION | |||
4xro | [A6] | [A6] | [A6] | 2.01 | ||||
4xrq | [A6] | [A6] | [A6] | 1.95 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE | |||
5hgk | [A] | [A] | [A] | 1.76 | CL:CHLORIDE ION | |||
5hgl | [A6] | [A6] | [A6] | 3.1 | 1B0:N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE CL:CHLORIDE ION | |||
5hgm | [A6] | [A6] | [A6] | 2.04 | DTP:2___sq___-DEOXYADENOSINE 5___sq___-TRIPHOSPHATE | |||
5hgn | [A6] | [A6] | [A6] | 1.9 | ||||
5hgo | [A6] | [A6] | [A6] | 2 | ||||
5jpa | [A6] | [A6] | [A6] | 1.7 |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA